Assigns celltype label based on probabilities in the metadata
AssignCellType.RdAssigns celltype label based on probabilities in the metadata
Usage
AssignCellType(
seuratObj,
probabilityColumns,
fieldName = "RIRA_Consensus",
minimum_probability = 0.5,
minimum_delta = 0.25
)Arguments
- seuratObj
The Seurat Object to be updated
- probabilityColumns
The set of columns containing probabilities for each classifier to include
- fieldName
The name of the metadata column to store the result
- minimum_probability
The minimum probability for a confident cell type assignment
- minimum_delta
The minimum difference in probabilities necessary to call one celltype over another.