CalculateUCellScores

This will calculate a handful of standardized UCell scores for a seurat object

Usage

CalculateUCellScores(
  seuratObj,
  forceRecalculate = FALSE,
  seed = GetSeed(),
  ncores = 1,
  assayName = "RNA",
  storeRanks = TRUE,
  plotCor = TRUE
)

Arguments

seuratObj

The seurat object

forceRecalculate

If true, UCell will always be re-run, even if the field is already present.

seed

If non-null, set.seed() will be called prior to running UCell

ncores

The number of core to use with UCell::AddModuleScore_UCell

assayName

The assay from which to calculate UCell scores.

storeRanks

Passed directly to UCell::AddModuleScore_UCell. Increases object size but makes future calculations quicker.

plotCor

If true, a plot of correlations between the UCell score and each component gene will be shown