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Predicts T cell activation using sPLS derived components and a trained logistic model on transformed variates

PredictTcellActivation.Rd

Predicts T cell activation using a trained model

Usage

PredictTcellActivation(
  seuratObj,
  modelName = "GeneralizedTCR",
  combineClasses = TRUE
)

Arguments

seuratObj

The Seurat Object to be updated

modelName

The model to use, either GeneralizedTCR, CD4, or CD8

combineClasses

Most models were trained using finer grained classes than is generally needed. The default (combinedClasses=TRUE), will merge some similar classes. Set this to false to turn off this behavior.

Value

A Seurat object with the sPLSDA scores and predicted probabilities added to the metadata